SAMN14270950

ENA Accession: SAMN14270950
Study: Levade_2020_cholera
Collection Date: 2012-01-01
Location: 23.8026, 90.4451
SPIRE Cluster Count: 21
SPIRE Genome Count: 82
adult human host mammalian host animal host host-associated intestine digestive tract

  MAGs

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  Sample Downloads

Assembly & Genes
   Assembly megahit/1.2.9
Annotations
   EggNOG Annotation eggnog-mapper/2.1.3
   tRNA Sequences trnascan/2.0.9
   CRISPR Sequences minced/0.4.2
   Antibiotic Resistance Annotations deepARG/1.0
   Antibiotic Resistance Annotations abricate/1.0.1 (megares)
   Antibiotic Resistance Annotations abricate/1.0.1 (vfdb)
Ribosomal RNA
   Bacteria rRNA barrnap/0.9
   Archaea rRNA barrnap/0.9
   Eukaryote rRNA barrnap/0.9
   Mitochondria rRNA barrnap/0.9
Other
   Contig Depth jgi_summarize_bam_contig_depths

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