Ivy_2018_synovial_fluid

Direct Detection and Identification of Prosthetic Joint Infection Pathogens in Synovial Fluid by Metagenomic Shotgun Sequencing.
180
Samples
7
SPIRE Clusters
16
SPIRE Genomes
Accessions: PRJNA436717
mock community human host host-associated industrialized animal host elderly adult anthropogenic mammalian host
View in MetaMaps

  Sequencing

Total Sequencing (bp): 150,304,976,513
Average depth per sample (bp): 835,027,647
Average read length: 142
Instrument Model:
Seq Mode:

  Study Downloads

   Assemblies (93M  MD5: 20aaabfc02d71d3fe2301db016661686)
   MAGs (15M  MD5: 783639f8df33621c1f62b53b2d8a6e57)
   Genecalls (FNA) (107M  MD5: 6cddf328a6bdeba8e3a2dead0a249006)
   Proteins (FAA) (76M  MD5: 609790239e7526a37177a9b6921330ae)
   mOTUs3 Profile
   SPIRE mOTUs Profile

  Samples 180 samples

  Download Table Data

Spotted an error? Report it on GitHub