SPIRE
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Mycobacteriales
order
Bacteria
Actinomycetota
Actinomycetes
Mycobacteriales
907
SPIRE Clusters
6,082
Genomes in SPIRE
View in GTDB
Habitats
samples by habitat term
host-associated
2,539
animal host
2,399
mammalian host
2,103
human host
1,944
industrialized
1,766
digestive tract
1,363
terrestrial
1,268
skin
955
adult
915
intestine
830
mouth
756
anthropogenic
747
elderly
620
soil
605
built environment
556
aquatic
534
saliva
433
urban
241
lentic
189
fresh water
182
child
175
low salinity
146
plant host
141
wastewater
134
forest
128
lacustrine
127
sludge
121
marine
108
rhizosphere
103
airways
97
agriculture
97
wetland
67
paludal
67
very low temperature
63
hospital
61
infant
60
high salinity
58
benthic
56
sediment
55
grassland
53
tundra
52
arid
45
urogenital tract
43
permafrost
42
pelagic
39
cropland
39
adolescent
39
preterm birth
39
contaminated
34
anaerobic
34
medium temperature
30
rural
27
medium salinity
26
brackish water
24
ice
23
low temperature
23
non-industrialized
21
stream
20
subsurface
18
littoral
18
groundwater
16
lake bed
14
insect host
14
plant litter
12
lotic
10
very high salinity
7
saline water
6
traditional agriculturalist
5
sewage
5
phyllosphere
5
fluvial
5
salt marsh
5
hot spring
4
spring
4
estuary
3
ancient dental calculus
2
negative control
2
mine
2
sea floor
2
full term birth
2
waste
2
ancient microbiome
2
acidic
1
SPIRE Genomes
6,082 genomes
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